Logo Università di Pisa BITS Annual Meeting 2011 - June 20-22, Pisa, Italy Istituto di Informatica e Telematica, Consiglio Nazionale delle Ricerche, Pisa
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Volume 13 Supplement 4
Italian Society of Bioinformatics (BITS): Annual Meeting 2011
Pisa, Italy
20-22 June 2011
Edited by Paolo Romano and Manuela Helmer-Citterich

Table of contents

  • Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian Society of Bioinformatics
    Paolo Romano, Manuela Helmer-Citterich
  • Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee
    Jia-Ming Chang, Paolo Di Tommaso, Jean-Franšois Taly, Cedric Notredame
  • PyMod: sequence similarity searches, multiple sequence-structure alignments, and homology modeling within PyMOL
    Emanuele Bramucci, Alessandro Paiardini, Francesco Bossa, Stefano Pascarella
  • Tandem repeats discovery service (TReaDS) applied to finding novel cis-acting factors in repeat expansion diseases
    Marco Pellegrini, Maria Elena Renda, Alessio Vecchio
  • GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database
    Paolo Pannarale, Domenico Catalano, Giorgio De Caro, Giorgio Grillo, Pietro Leo, Graziano PappadÓ, Francesco Rubino, Gaetano Scioscia, Flavio Licciulli
  • An ICT infrastructure to integrate clinical and molecular data in oncology research
    Daniele Segagni, Valentina Tibollo, Arianna Dagliati, Alberto Zambelli, Silvia G Priori, Riccardo Bellazzi
  • OREMPdb: a semantic dictionary of computational pathway models
    Renato Umeton, Giuseppe Nicosia, C Forbes Dewey
  • Towards linked open gene mutations data
    Achille Zappa, Andrea Splendiani, Paolo Romano
  • Fine-tuning anti-tumor immunotherapies via stochastic simulations
    Giulio Caravagna, Roberto Barbuti, Alberto d'Onofrio
  • Characterization of the emergent properties of a synthetic quasi-cellular system
    Lorenzo Lazzerini-Ospri, Pasquale Stano, PierLuigi Luisi, Roberto Marangoni
  • Stochastic simulations of minimal cells: the Ribocell model
    Fabio Mavelli
  • Characterization of an inducible promoter in different DNA copy number conditions
    Susanna Zucca, Lorenzo Pasotti, Giuliano Mazzini, Maria Gabriella Cusella De Angelis, Paolo Magni
  • In-silico and in-vivo analyses of EST databases unveil conserved miRNAs from Carthamus tinctorius and Cynara cardunculus
    Domenico Catalano, Domenico Pignone, Gabriella Sonnante, Mariella M Finetti-Siale
  • Design of a multi-signature ensemble classifier predicting neuroblastoma patients' outcome
    Andrea Cornero, Massimo Acquaviva, Paolo Fardin, Rogier Versteeg, Alexander Schramm, Alessandra Eva, Maria Bosco, Fabiola Blengio, Sara Barzaghi, Luigi Varesio(28 March 2012)
  • Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
    Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana 2012)
  • Primates and mouse NumtS in the UCSC Genome Browser
    Francesco Maria Calabrese, Domenico Simone, Marcella Attimonelli
  • Intuitive representation of surface properties of biomolecules using BioBlender
    Raluca Andrei, Marco Callieri, Maria Zini, Tiziana Loni, Giuseppe Maraziti, Mike Pan, Monica Zoppè
  • Identification of binding pockets in protein structures using a knowledge-based potential derived from local structural similarities
    Valerio Bianchi, Pier Federico Gherardini, Manuela Helmer-Citterich, Gabriele Ausiello
  • Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii
    Federico Fogolari, Alessandra Corazza, Vijaylakshmi Yarra, Anusha Jalaru, Paolo Viglino, Gennaro Esposito
  • CONS-COCOMAPS: a novel tool to measure and visualize the conservation of inter-residue contacts in multiple docking solutions
    Anna Vangone, Romina Oliva, Luigi Cavallo
  • Modeling gene regulatory network motifs using statecharts
    Fabio Fioravanti, Manuela Helmer-Citterich, Enrico Nardelli
  • BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments
    Arianna Consiglio, Massimo Carella, Giorgio De Caro, Gianfranco Delle Foglie, Candida Giovannelli, Giorgio Grillo, Massimo Ianigro, Flavio Licciulli, Orazio Palumbo, Ada Piepoli, Elena Ranieri, Sabino Liuni
  • Improving biomarker list stability by integration of biological knowledge in the learning process
    Tiziana Sanavia, Fabio Aiolli, Giovanni Da San Martino, Andrea Bisognin, Barbara Di Camillo